Plot
Generations ago on planet Zi, at the height of human development, Zoids were used in an epic war that eventually led to the destruction of the world. So devastated was the world that the planet was barely habitable for humanity and nature. The catastrophe was named "Gods' Fury" and was considered a supernatural event by locals who believed the world was punished because of humanity's foolishness.
Using one of their most powerful and largest Zoids, the surviving people of this conflict rode on Gildragons for safety and shelter. While one group returned to the earth and founded Iron Rock City, another group built a floating city in the heavens called Sky City. The people there rebuilt their society and eventually began researching ways to restore the planet. After many years of research, they planned to use their advanced bio-mechanical technology to restore the world in order to eventually re-inhabit the land their ancestors almost destroyed; as they lived in their advanced city, they became hubris, comfortable where they are and no longer desired to return.
Although not returning, the technology they developed was implemented upon the planet, which utilized to what the surviving locals refer as generators. It has unique capabilities to maintain energy and growth for machinery and life in the surrounding area. Eventually, Sky City would encounter energy depletion and scouted Zi with their own secret agents. As other agents monitored the growth and progress of the humans that survived "Gods' Fury," others approached people to make special arrangements. The council of Sky City chose a city called Digu and traded off advanced technology for Reggel (universal energy resource, like oil, from their generators). Their arrangement not only involved treaties, but also sending a Sky citizen to be adopted as part of the agreement. The King of Digu would accept Jiin as his son and Digu has since invested resources and developed their own technologies to form their own army, the Digald Army. Eventually, Digald would mass-produce their own special units, Bio-Zoids (a nigh-indestructible unit in combat, only weakness is weapons made of Zi-alloy and damage inside its mouth), with the aid of technology provided by Iron Rock.
The Bio Zoids were made in rapid numbers and gradually started conquering neighboring villages, towns, and cities that had generators to help produce more energy for Digald's energy consumption. They used special stones that could detect a human's ability to pilot a Bio-Zoid and drafted them into Digald forces, never to see their friends and family again. Though known and feared throughout the continent, people couldn't do much to defend themselves as their Zoids were no match against the formidable armor of the Bio-Zoids and they couldn't survive without having a generator; people either surrendered or were destroyed.
The story of Zoids Genesis actually begins around here, as Lord Ra-Kan (heir to the Kira Kingdom) roams the world with Princess Mii (niece to Ra-Kan) after his kingdom has fallen to Digald. Though his kingdom had fallen, Kira's survivors rebuilt a new city called Zuuri in a new secret location far from Digald's influence. Young Ruuji Familon was working with his father to help recover Zoids from the bottom of the ocean in their village, Miroodo. While Mii and Ra-Kan was within the local area, so was Major Zairin (a top commander of Digald). Zairin would discover that Miroodo had a small generator for Digald forces to claim; his troops arrived and attacked Miroodo. Ruuji could never activate a Zoid, but the situation was dire and he jumped into the just-excavated Murasame Liger (that utilizes a Zi-alloy katana). This Zoid answered to Ruuji's call and activated to aid him against the Bio-Raptors attacking his village.
Ra-Kan and Mii joined Ruuji in their fight against Digald. Eventually, a battle between Zairin and Ruuji lead to the accidental damage to Miroodo's generator. With the generator damaged, this led to the fear of Miroodo's destruction (as all settlements depended on them); Ra-Kan agreed to aid Ruuji in finding a generator mechanic. This quest for finding a generator repairman would lead Ruuji to befriend Kotona (formally trained assassin of Iron Rock), Garaga (former anti-Digald rebel leader), Ron (Sky City spy agent), and Seijuurou (former Zoid champion and Ruuji's combat teacher; dying from cancer). In between Ruuji's quest, they discovered Murasame Liger had the ability to evolt (change combat forms) into Hayate Liger (high-speed combat form) and it played a pivotal role in their survival. Eventually though, Ruuji and his Liger would play a larger role in things to come.
Through their adventures, Ruuji was unable to find a person capable of repairing the generator; his travels made him realize even if the generator could be fixed, Digald's expansion will eventually rule everything including Miroodo; Ruuji suggested to Ra-Kan to fight against Digald and eventually Ra-Kan agreed that Digald's expansion couldn't continue. With the resources and forces of Zuuri, Ra-Kan began organizing a counter-offense army. They invited many resistance groups to their cause, but only a few had interest in joining them as there was strong fear and reluctance to confront the Digald Army; with the eventual successes of the Digald Suppression Army, their reputation garnered the attention of many and their forces eventually grew in numbers.
Ron had always been concerned about Jiin's activities and secretly utilized his advanced resources to help Ruuji and Ra-Kan; the team was eventually introduced to Sky City (where Seijuurou was cured of his condition) in hopes to convince the council to provide aid in their cause. Unfortunately, the council was not moved to assist as they felt the troubles below don't concern them nor thought of Jiin as a serious threat against their superior technologies; that would be proven terribly wrong. In Sky City's hubris, Jiin betrayed his own people and launched Bio-Raptor Guis on an aerial assault against Sky City and sank the citadel; many of its citizens survived and found refuge in Zuuri, but they had difficulty adapting to primitive life and forced to recognize their conceit. It was only then the Sky City elders revealed their original intent to the rebellion: they intended Jiin to take over Digald to have an Earth-based vassal force for military might as well as long term reggel supply. Unfortunately, Jiin's ambition was too great and they were betrayed by their overconfidence in controlling him, leading to their demise. With Sky City destroyed, there was no real power left to oppose him, except for the resistance forces, which he considered as a mere nuisance.
Meanwhile, Jiin's power and influence grew within Digu. After the death of their king, Jiin declared himself emperor and eventually a god to Digald. His new policies were not only more draconian, but it alienated many of the officers under Jiin. However, it was not an issue to Jiin, since he is able to extract human souls into the bodies of Bio-Zoid droid pilots; he tripled his forces without the need for human pilots. Zairin was obsessed with defeating Ruuji until he discovered the shocking truth of their bolstered forces, it snapped him out of his obsession and caused him to defect. Eventually, word had spread within Digald forces about their pilots were extracted human souls, many of Digald Forces defected to the Digald Suppression Army.
After long hard battles against Digald Forces, it was an unusual alliance when most of the human officers of Digald defected to the anti-Digald army. Ruuji felt their anti-Digald army title was no longer appropriate and renamed themselves the Jiin Suppression Army. A large final battle was waged against Jiin in his Bio-Tyranno. After a very difficult fight, Ruuji destroyed Jiin with Mugen Liger (evolt form after Hayate Liger) and ended the conflict to restore peace to the lands. After the battle, it was discovered that Murasame Liger had unique regeneration technologies that can help revive Miroodo's generator; Ruuji returned to his village and helped restore life back to his hometown.