Issue #1: In The Beginning
Batman opens a package to find the shredded remains of a bat costume once worn by his father. He investigates to find the costume missing from its display case in the Batcave, with a threatening note left in its place: THIS IS ONLY THE BEGINNING, BATMAN! BEFORE I'M DONE, I WILL DESTROY YOU!
Batman reminisces about the time when his father, Dr. Thomas Wayne, wore the costume to a charity costume party and was taken hostage by a group of thugs looking for a doctor. He was taken to see their boss, bank robber Lew Moxon, who had been shot and needed the doctor to remove the bullet. Instead, Dr. Wayne attacked the thugs and defeated them. He turned them over to the police, including then-Lieutenant James W. Gordon. Wayne testified against Moxon, who was convicted. Years later, he was released and threatened to have his revenge against Wayne. Several weeks later, Dr. Wayne and his wife Martha were shot dead in front of their son Bruce (Batman) by an apparent mugger named Joe Chill. Batman recalls those who looked after him following his parents' deaths – Leslie Thompkins and Mrs. Chilton, housekeeper of Bruce's uncle, Philip Wayne (who had been appointed Bruce's guardian, but was seldom at home as his work required him to travel a lot). Unbeknownst to him, but known to his butler, Alfred Pennyworth, Mrs. Chilton was Joe Chill's mother.
Young Bruce dedicated his life to bringing his parents' killer to justice and waging war against all criminals. He studied and trained hard, and followed the career of a police detective named Harvey Harris. Bruce created a costume (that of the original Robin) to hide his identity and set out to meet Harris. Bruce happened upon a criminal waiting to attack Harris, and managed to thwart the would-be attacker. To repay him, Harris taught Bruce everything about the art of detecting, and gave him the name "Robin".
Bruce continued training and went on to college to study criminology. A lesson learned in a law class – that the law and justice are not one and the same – dissuaded Bruce from becoming a police officer as he had intended, feeling that he would be too hampered by the law. While trying to decide what kind of symbol to become in order to strike terror into the hearts of criminals, a bat flew through his window of his study, inspiring him to become Batman.
After years of crimefighting and failure to locate his parents' killer, Batman happened upon a smuggling enterprise run through a trucking company owned by Joe Chill. He confronted Chill with his story, and revealed his secret identity to him. Batman let Chill run scared; he ran for help to his henchmen at his garage and told them what had happened. After they learned he was responsible for creating Batman who had plagued them for years, the henchmen shot and killed Chill before he could reveal Batman's secret identity.
Several months later, Bruce happened upon his father's costume and journal. He learned from the journal that Chill had not been a mugger, but was working for Lew Moxon. Moxon had been in a car accident and suffered from amnesia. He did not remember Thomas Wayne or what he had done. With his own costume torn during a fight with Moxon's henchmen, Batman decided to wear his father's costume instead when he confronted Moxon. The costume jogged Moxon's memory, and he ran in fear from Batman right into the path of an oncoming truck, which killed him.
The issue ends with a 3-page feature called "The Secrets Of The Batman", by Joe Staton, from 1978.
Issue #2: "With Friends Like These..."
Batman goes to a bar to find someone who can give him information about the package. After he is attacked he almost beats his informant to death, until Robin arrives to bring him back to his senses.
In trying to understand Batman's anger, Robin recalls his own origin. He recalls the night in Newtown where his parents, the Flying Graysons, performed their trapeze act for the final time, as the ropes snapped, sending them plummeting to the ground. Later that night, Dick Grayson (Robin) learned that the trapeze had been rigged by mobsters looking to extort protection money from the owner of the circus. Dick was prepared to go to the police when Batman approached him and told him of "Boss" Zucco, a mobster who controlled the whole town. Bruce Wayne took legal guardianship of Dick, and taught him the arts of crimefighting. He gave Grayson his old Robin costume, and the name to go with it.
They set out on Zucco's trail, and found him throwing one of his henchmen off of a scaffolding. Robin took a photo that led to Zucco's arrest and apparent execution. After that, he became Batman's partner. He found it hard to deal with the taunts of his classmates, but eventually graduated and left Wayne Manor to attend Hudson University. That was when Bruce and Alfred moved to the penthouse atop the Wayne Foundation Building in Gotham City, and built a new Batcave in an abandoned subway tunnel beneath the building to go with it. Robin has returned to Gotham City now at the call of Alfred, who is worried about Batman.
Alfred struggles to understand Batman's painful memories by recalling his own past. He remembers in the closing days of World War II when he helped refugees escape the
Issue #3: The Man Behind The Mask!
Batman goes off on his own to take vengeance on the person behind what is going on. Meanwhile, Robin calls Jack Edison, a stunt driver who has built the latest Batmobile for the Dynamic Duo, and commissions him to build another one at his usual fee with a bonus for the inconvenience. He gladly does so because Batman once saved his life by pulling him from a flaming car wreck.
Batman searches the city, asking every informant he has about the case, but with no luck. He finally goes to see Commissioner Gordon at Gotham City Police H.Q. The Commissioner suggests that Batman does not want to find any clues because the suspect is someone close to him. Batman suddenly leaves Gordon to reminisce about the first time he met Batman; how Batman initially only left scrawled notes on the criminals he tied up and left for the police, until one day he caught a man about to attack Gordon with a knife. Batman quickly left, but later that night, he came to Gordon's office. Gordon pulled a gun and prepared to shoot him, but Batman explained that they were two of a kind, and that he was able to bend the law that Gordon could not in order to achieve justice. Gordon grudgingly accepted Batman.
Gordon recalled how Batman had influenced his daughter, Barbara. She fell madly in love with him at first sight and she began studying martial arts alongside her library science Ph.D. She wore a Batgirl costume one night to a policeman's masquerade ball, but on the way to the ball, she noticed Bruce Wayne being kidnapped by a gang of Killer Moth's henchmen. She promptly attacked the men and freed Bruce, helping to bring Killer Moth to justice and starting her career as Batgirl.
The next morning, Bruce cancels all his appointments. His friend and associate, Lucius Fox, tries to talk to Bruce, but Bruce does not want to talk. Lucius reminds him of their first meeting, back when he was in the Wayne Foundation's finance division, and brought a portfolio suggestion to Bruce, who liked the idea and started Lucius on the path that made his entire career.